| Line | Branch | Exec | Source |
|---|---|---|---|
| 1 | #include "sakharov_a_shell_sorting_with_merging_butcher/all/include/ops_all.hpp" | ||
| 2 | |||
| 3 | #include <mpi.h> | ||
| 4 | #include <omp.h> | ||
| 5 | #include <tbb/blocked_range.h> | ||
| 6 | #include <tbb/parallel_for.h> | ||
| 7 | |||
| 8 | #include <algorithm> | ||
| 9 | #include <cstddef> | ||
| 10 | #include <functional> | ||
| 11 | #include <thread> | ||
| 12 | #include <utility> | ||
| 13 | #include <vector> | ||
| 14 | |||
| 15 | #include "sakharov_a_shell_sorting_with_merging_butcher/common/include/common.hpp" | ||
| 16 | #include "util/include/util.hpp" | ||
| 17 | |||
| 18 | namespace sakharov_a_shell_sorting_with_merging_butcher { | ||
| 19 | |||
| 20 | namespace { | ||
| 21 | |||
| 22 | constexpr std::size_t kMinParallelChunkSize = 1U << 14; | ||
| 23 | |||
| 24 | 7 | std::vector<std::size_t> BuildChunkBounds(std::size_t size, int requested_chunks) { | |
| 25 |
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7 | if (size == 0) { |
| 26 | ✗ | return {0}; | |
| 27 | } | ||
| 28 | |||
| 29 |
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7 | const std::size_t max_chunks_by_size = std::max<std::size_t>(1, size / kMinParallelChunkSize); |
| 30 |
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14 | const int chunks = std::max(1, std::min<int>(requested_chunks, static_cast<int>(max_chunks_by_size))); |
| 31 | |||
| 32 | 7 | std::vector<std::size_t> bounds; | |
| 33 |
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7 | bounds.reserve(static_cast<std::size_t>(chunks) + 1); |
| 34 | |||
| 35 | 7 | const std::size_t base_chunk = size / static_cast<std::size_t>(chunks); | |
| 36 | 7 | const std::size_t remainder = size % static_cast<std::size_t>(chunks); | |
| 37 | const auto chunk_count = static_cast<std::size_t>(chunks); | ||
| 38 | |||
| 39 |
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7 | bounds.push_back(0); |
| 40 |
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14 | for (std::size_t chunk = 0; chunk < chunk_count; ++chunk) { |
| 41 |
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14 | const std::size_t chunk_size = base_chunk + (chunk < remainder ? 1 : 0); |
| 42 |
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7 | bounds.push_back(bounds.back() + chunk_size); |
| 43 | } | ||
| 44 | |||
| 45 | return bounds; | ||
| 46 | } | ||
| 47 | |||
| 48 | 5 | std::vector<std::size_t> BuildBoundsFromCounts(const std::vector<int> &counts) { | |
| 49 |
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5 | std::vector<std::size_t> bounds; |
| 50 |
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5 | bounds.reserve(counts.size() + 1); |
| 51 |
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5 | bounds.push_back(0); |
| 52 |
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15 | for (int count : counts) { |
| 53 |
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10 | bounds.push_back(bounds.back() + static_cast<std::size_t>(count)); |
| 54 | } | ||
| 55 | 5 | return bounds; | |
| 56 | } | ||
| 57 | |||
| 58 | 5 | std::vector<int> BuildMpiChunkCounts(int data_size, int process_count) { | |
| 59 | 5 | std::vector<int> counts(static_cast<std::size_t>(process_count), 0); | |
| 60 | 5 | const int base = data_size / process_count; | |
| 61 | 5 | const int remainder = data_size % process_count; | |
| 62 | |||
| 63 |
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15 | for (int rank = 0; rank < process_count; ++rank) { |
| 64 |
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18 | counts[static_cast<std::size_t>(rank)] = base + (rank < remainder ? 1 : 0); |
| 65 | } | ||
| 66 | |||
| 67 | 5 | return counts; | |
| 68 | } | ||
| 69 | |||
| 70 | 5 | std::vector<int> BuildDisplacements(const std::vector<int> &counts) { | |
| 71 | 5 | std::vector<int> displacements(counts.size(), 0); | |
| 72 |
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10 | for (std::size_t i = 1; i < counts.size(); ++i) { |
| 73 | 5 | displacements[i] = displacements[i - 1] + counts[i - 1]; | |
| 74 | } | ||
| 75 | 5 | return displacements; | |
| 76 | } | ||
| 77 | |||
| 78 | 7 | void SortChunksOpenMP(std::vector<int> &data, const std::vector<std::size_t> &bounds, int thread_count) { | |
| 79 | 7 | const int chunk_count = static_cast<int>(bounds.size()) - 1; | |
| 80 | |||
| 81 | 7 | #pragma omp parallel for default(none) shared(data, bounds, chunk_count) num_threads(thread_count) schedule(static) | |
| 82 | for (int chunk = 0; chunk < chunk_count; ++chunk) { | ||
| 83 | const auto index = static_cast<std::size_t>(chunk); | ||
| 84 | auto begin = data.begin() + static_cast<std::ptrdiff_t>(bounds[index]); | ||
| 85 | auto end = data.begin() + static_cast<std::ptrdiff_t>(bounds[index + 1]); | ||
| 86 | std::sort(begin, end); | ||
| 87 | } | ||
| 88 | 7 | } | |
| 89 | |||
| 90 |
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5 | void MergeRange(const std::vector<int> &source, std::vector<int> &destination, const std::vector<std::size_t> &bounds, |
| 91 | std::size_t width, std::size_t merge_index) { | ||
| 92 | 5 | const std::size_t chunk_count = bounds.size() - 1; | |
| 93 | 5 | const std::size_t left_chunk = merge_index * 2 * width; | |
| 94 |
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5 | const std::size_t mid = std::min(left_chunk + width, chunk_count); |
| 95 |
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5 | const std::size_t right = std::min(left_chunk + (2 * width), chunk_count); |
| 96 | |||
| 97 | 5 | const std::size_t begin_index = bounds[left_chunk]; | |
| 98 | 5 | const std::size_t middle_index = bounds[mid]; | |
| 99 |
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5 | const std::size_t end_index = bounds[right]; |
| 100 | |||
| 101 | auto output_begin = destination.begin() + static_cast<std::ptrdiff_t>(begin_index); | ||
| 102 |
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5 | if (mid == right) { |
| 103 | ✗ | std::copy(source.begin() + static_cast<std::ptrdiff_t>(begin_index), | |
| 104 | source.begin() + static_cast<std::ptrdiff_t>(end_index), output_begin); | ||
| 105 | } else { | ||
| 106 | 5 | std::merge(source.begin() + static_cast<std::ptrdiff_t>(begin_index), | |
| 107 | source.begin() + static_cast<std::ptrdiff_t>(middle_index), | ||
| 108 | source.begin() + static_cast<std::ptrdiff_t>(middle_index), | ||
| 109 | source.begin() + static_cast<std::ptrdiff_t>(end_index), output_begin); | ||
| 110 | } | ||
| 111 | 5 | } | |
| 112 | |||
| 113 | ✗ | void MergePassTBB(const std::vector<int> &source, std::vector<int> &destination, const std::vector<std::size_t> &bounds, | |
| 114 | std::size_t width) { | ||
| 115 | ✗ | const std::size_t chunk_count = bounds.size() - 1; | |
| 116 | ✗ | const std::size_t merge_count = (chunk_count + (2 * width) - 1) / (2 * width); | |
| 117 | |||
| 118 | ✗ | tbb::parallel_for(tbb::blocked_range<std::size_t>(0, merge_count), [&](const tbb::blocked_range<std::size_t> &range) { | |
| 119 | ✗ | for (std::size_t merge_index = range.begin(); merge_index != range.end(); ++merge_index) { | |
| 120 | ✗ | MergeRange(source, destination, bounds, width, merge_index); | |
| 121 | } | ||
| 122 | ✗ | }); | |
| 123 | ✗ | } | |
| 124 | |||
| 125 | 5 | void MergePassThreadWorker(const std::vector<int> &source, std::vector<int> &destination, | |
| 126 | const std::vector<std::size_t> &bounds, std::size_t width, std::size_t begin_merge, | ||
| 127 | std::size_t end_merge) { | ||
| 128 |
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10 | for (std::size_t merge_index = begin_merge; merge_index < end_merge; ++merge_index) { |
| 129 | 5 | MergeRange(source, destination, bounds, width, merge_index); | |
| 130 | } | ||
| 131 | 5 | } | |
| 132 | |||
| 133 |
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5 | void MergePassSTLThreads(const std::vector<int> &source, std::vector<int> &destination, |
| 134 | const std::vector<std::size_t> &bounds, std::size_t width, int requested_threads) { | ||
| 135 | 5 | const std::size_t chunk_count = bounds.size() - 1; | |
| 136 |
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5 | const std::size_t merge_count = (chunk_count + (2 * width) - 1) / (2 * width); |
| 137 | const auto worker_count = | ||
| 138 |
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5 | std::min<std::size_t>(merge_count, static_cast<std::size_t>(std::max(1, requested_threads))); |
| 139 | |||
| 140 | 5 | std::vector<std::thread> threads; | |
| 141 |
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5 | threads.reserve(worker_count); |
| 142 | |||
| 143 | 5 | const std::size_t base_chunk = merge_count / worker_count; | |
| 144 | 5 | const std::size_t remainder = merge_count % worker_count; | |
| 145 | 5 | std::size_t current = 0; | |
| 146 | |||
| 147 |
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10 | for (std::size_t worker = 0; worker < worker_count; ++worker) { |
| 148 |
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5 | const std::size_t count = base_chunk + (worker < remainder ? 1 : 0); |
| 149 | 5 | const std::size_t next = current + count; | |
| 150 |
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5 | threads.emplace_back(MergePassThreadWorker, std::cref(source), std::ref(destination), std::cref(bounds), width, |
| 151 | current, next); | ||
| 152 | 5 | current = next; | |
| 153 | } | ||
| 154 | |||
| 155 |
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10 | for (auto &thread : threads) { |
| 156 |
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5 | thread.join(); |
| 157 | } | ||
| 158 | 5 | } | |
| 159 | |||
| 160 |
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7 | std::vector<int> MergeChunksTBB(std::vector<int> source, const std::vector<std::size_t> &bounds) { |
| 161 | 7 | const std::size_t chunk_count = bounds.size() - 1; | |
| 162 |
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7 | if (chunk_count <= 1) { |
| 163 | return source; | ||
| 164 | } | ||
| 165 | |||
| 166 | ✗ | std::vector<int> destination(source.size()); | |
| 167 | ✗ | for (std::size_t width = 1; width < chunk_count; width *= 2) { | |
| 168 | ✗ | MergePassTBB(source, destination, bounds, width); | |
| 169 | source.swap(destination); | ||
| 170 | } | ||
| 171 | |||
| 172 | return source; | ||
| 173 | } | ||
| 174 | |||
| 175 |
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5 | std::vector<int> MergeChunksSTLThreads(std::vector<int> source, const std::vector<std::size_t> &bounds, |
| 176 | int thread_count) { | ||
| 177 | 5 | const std::size_t chunk_count = bounds.size() - 1; | |
| 178 |
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5 | if (chunk_count <= 1) { |
| 179 | return source; | ||
| 180 | } | ||
| 181 | |||
| 182 | 5 | std::vector<int> destination(source.size()); | |
| 183 |
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10 | for (std::size_t width = 1; width < chunk_count; width *= 2) { |
| 184 |
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5 | MergePassSTLThreads(source, destination, bounds, width, thread_count); |
| 185 | source.swap(destination); | ||
| 186 | } | ||
| 187 | |||
| 188 | return source; | ||
| 189 | } | ||
| 190 | |||
| 191 |
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10 | std::vector<int> SortLocalPart(std::vector<int> data) { |
| 192 |
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10 | if (data.empty()) { |
| 193 | return data; | ||
| 194 | } | ||
| 195 | |||
| 196 | 7 | const int thread_count = std::max(1, ppc::util::GetNumThreads()); | |
| 197 | 7 | const auto bounds = BuildChunkBounds(data.size(), thread_count); | |
| 198 | |||
| 199 | 7 | SortChunksOpenMP(data, bounds, thread_count); | |
| 200 |
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14 | return MergeChunksTBB(std::move(data), bounds); |
| 201 | } | ||
| 202 | |||
| 203 | struct MpiRootData { | ||
| 204 | int input_size{0}; | ||
| 205 | std::vector<int> counts; | ||
| 206 | std::vector<int> displacements; | ||
| 207 | }; | ||
| 208 | |||
| 209 | const int *RootBuffer(const std::vector<int> &buffer, int rank) { | ||
| 210 |
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10 | if (rank != 0) { |
| 211 | return nullptr; | ||
| 212 | } | ||
| 213 | 10 | return buffer.data(); | |
| 214 | } | ||
| 215 | |||
| 216 | const int *RootInputBuffer(const std::vector<int> &input, int rank) { | ||
| 217 |
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5 | if (rank != 0 || input.empty()) { |
| 218 | return nullptr; | ||
| 219 | } | ||
| 220 | return input.data(); | ||
| 221 | } | ||
| 222 | |||
| 223 | int *BufferOrNull(std::vector<int> &buffer) { | ||
| 224 |
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36 | if (buffer.empty()) { |
| 225 | 14 | return nullptr; | |
| 226 | } | ||
| 227 | return buffer.data(); | ||
| 228 | } | ||
| 229 | |||
| 230 | 10 | MpiRootData BuildRootData(const std::vector<int> &input, int rank, int process_count) { | |
| 231 | 10 | MpiRootData root_data; | |
| 232 |
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10 | if (rank == 0) { |
| 233 | 5 | root_data.input_size = static_cast<int>(input.size()); | |
| 234 |
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5 | root_data.counts = BuildMpiChunkCounts(root_data.input_size, process_count); |
| 235 |
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10 | root_data.displacements = BuildDisplacements(root_data.counts); |
| 236 | } | ||
| 237 | 10 | return root_data; | |
| 238 | ✗ | } | |
| 239 | |||
| 240 | 10 | std::vector<int> ScatterInput(const std::vector<int> &input, const MpiRootData &root_data, int rank) { | |
| 241 |
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10 | int local_size = 0; |
| 242 | 10 | MPI_Scatter(RootBuffer(root_data.counts, rank), 1, MPI_INT, &local_size, 1, MPI_INT, 0, MPI_COMM_WORLD); | |
| 243 | |||
| 244 | 10 | std::vector<int> local_data(static_cast<std::size_t>(local_size)); | |
| 245 |
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20 | MPI_Scatterv(RootInputBuffer(input, rank), RootBuffer(root_data.counts, rank), |
| 246 | RootBuffer(root_data.displacements, rank), MPI_INT, BufferOrNull(local_data), local_size, MPI_INT, 0, | ||
| 247 | MPI_COMM_WORLD); | ||
| 248 | |||
| 249 | 10 | return local_data; | |
| 250 | } | ||
| 251 | |||
| 252 | 10 | std::vector<int> GatherSortedData(std::vector<int> &local_data, const MpiRootData &root_data, int rank) { | |
| 253 | 10 | std::vector<int> gathered_data; | |
| 254 |
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10 | if (rank == 0) { |
| 255 |
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5 | gathered_data.resize(static_cast<std::size_t>(root_data.input_size)); |
| 256 | } | ||
| 257 | |||
| 258 |
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10 | const auto local_size = static_cast<int>(local_data.size()); |
| 259 |
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10 | MPI_Gatherv(BufferOrNull(local_data), local_size, MPI_INT, BufferOrNull(gathered_data), |
| 260 | RootBuffer(root_data.counts, rank), RootBuffer(root_data.displacements, rank), MPI_INT, 0, | ||
| 261 | MPI_COMM_WORLD); | ||
| 262 | |||
| 263 | 10 | return gathered_data; | |
| 264 | } | ||
| 265 | |||
| 266 | 10 | std::vector<int> MergeRootData(std::vector<int> gathered_data, const MpiRootData &root_data, int rank) { | |
| 267 |
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10 | if (rank != 0) { |
| 268 | 5 | return {}; | |
| 269 | } | ||
| 270 | |||
| 271 | 5 | const auto bounds = BuildBoundsFromCounts(root_data.counts); | |
| 272 |
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10 | return MergeChunksSTLThreads(std::move(gathered_data), bounds, std::max(1, ppc::util::GetNumThreads())); |
| 273 | } | ||
| 274 | |||
| 275 | 10 | std::vector<int> BroadcastResult(std::vector<int> result, int rank) { | |
| 276 | 10 | int result_size = 0; | |
| 277 |
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10 | if (rank == 0) { |
| 278 | 5 | result_size = static_cast<int>(result.size()); | |
| 279 | } | ||
| 280 | 10 | MPI_Bcast(&result_size, 1, MPI_INT, 0, MPI_COMM_WORLD); | |
| 281 | 10 | result.resize(static_cast<std::size_t>(result_size)); | |
| 282 |
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12 | MPI_Bcast(BufferOrNull(result), result_size, MPI_INT, 0, MPI_COMM_WORLD); |
| 283 | |||
| 284 | 10 | return result; | |
| 285 | } | ||
| 286 | |||
| 287 | 10 | std::vector<int> RunMpiSort(const std::vector<int> &input, int rank, int process_count) { | |
| 288 | 10 | const auto root_data = BuildRootData(input, rank, process_count); | |
| 289 |
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10 | auto local_data = ScatterInput(input, root_data, rank); |
| 290 |
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10 | local_data = SortLocalPart(std::move(local_data)); |
| 291 |
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10 | auto gathered_data = GatherSortedData(local_data, root_data, rank); |
| 292 |
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20 | auto result = MergeRootData(std::move(gathered_data), root_data, rank); |
| 293 |
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30 | return BroadcastResult(std::move(result), rank); |
| 294 | 10 | } | |
| 295 | |||
| 296 | } // namespace | ||
| 297 | |||
| 298 |
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10 | SakharovAShellButcherALL::SakharovAShellButcherALL(const InType &in) { |
| 299 | SetTypeOfTask(GetStaticTypeOfTask()); | ||
| 300 |
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10 | GetInput() = in; |
| 301 | 10 | GetOutput() = OutType(); | |
| 302 | 10 | } | |
| 303 | |||
| 304 | 10 | bool SakharovAShellButcherALL::ValidationImpl() { | |
| 305 | 10 | return IsValidInput(GetInput()); | |
| 306 | } | ||
| 307 | |||
| 308 | 10 | bool SakharovAShellButcherALL::PreProcessingImpl() { | |
| 309 | 10 | GetOutput().assign(GetInput().size(), 0); | |
| 310 | 10 | return true; | |
| 311 | } | ||
| 312 | |||
| 313 | 10 | bool SakharovAShellButcherALL::RunImpl() { | |
| 314 | 10 | int rank = 0; | |
| 315 | 10 | int process_count = 1; | |
| 316 | 10 | MPI_Comm_rank(MPI_COMM_WORLD, &rank); | |
| 317 | 10 | MPI_Comm_size(MPI_COMM_WORLD, &process_count); | |
| 318 | |||
| 319 | 10 | GetOutput() = RunMpiSort(GetInput(), rank, process_count); | |
| 320 | 10 | return true; | |
| 321 | } | ||
| 322 | |||
| 323 | 10 | bool SakharovAShellButcherALL::PostProcessingImpl() { | |
| 324 | 10 | return true; | |
| 325 | } | ||
| 326 | |||
| 327 | } // namespace sakharov_a_shell_sorting_with_merging_butcher | ||
| 328 |